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Publications

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Submitted
Bray IE*, Clarke SE*, Casey KE, Nuyujukian P.  Submitted.  Neuroelectrophysiology-Compatible Electrolytic Lesioning. eLife.
2022
Bray IE, Clarke SE, Nuyujukian P.  2022.  Electrolytic lesioning through a microelectrode array and associated neuronal loss. Society for Neuroscience. 514.02
Ling AS, Silvernagel MP, Nuyujukian P.  2022.  A freely moving behavorial and neural data set to explore neural correlates of locomotion. Society for Neuroscience. 473.18
Yamada L, Oskotsky T, Nuyujukian P.  2022.  A minimally disruptive acquisition framework to build repositories of high-resolution, human intracranial electroencephalography and its application to an information theoretic seizure detection algorithm. Society for Neuroscience. 751.01
Clarke SE, Bray IE, Nuyujukian P.  2022.  Neuron population state reflects reaching impairment after brain injury. Society for Neuroscience. 514.01
Silvernagel MP, Ling AS, Nuyujukian P.  2022.  Point clouds synchronized to M1, PMd electrophysiology in large animals. Society for Neuroscience. 473.19
2021
Silvernagel MP, Ling A, Nuyujukian P.  2021.  A 3D Motion Capture Platform for Motor Systems Neuroscience. IEEE EMBS NER.
Peixoto D*, Verhein JR*, Kiani R, Kao JC, Nuyujukian P, Chandrasekaran C, Brown J, Fong S, Ryu SI, Shenoy KV et al..  2021.  Decoding and perturbing decision states in real time. Nature.
Clarke SE, Bray IE, Nuyujukian P.  2021.  Electrolytic lesion through multielectrode array alters population activity and impairs reach. Society for Neuroscience - Global Connectome.
Clarke SE, Bray IE, Nuyujukian P.  2021.  Electrolytic Lesioning through Multielectrode Array Alters Population Activity and Impairs Reach. IEEE EMBS NER.
Bray IE, Clarke SE, Nuyujukian P.  2021.  An Electrophysiology-Compatible Technique for Electrolytic Lesioning through a Micro-Electrode Array. IEEE EMBS NER.
Silvernagel MP*, Ling AS*, Nuyujukian P.  2021.  A Markerless Platform for Ambulatory Systems Neuroscience. Science Robotics. 6(58)
Ling A, Silvernagel MP, Nuyujukian P.  2021.  Markerless Point Cloud Pose Tracking for Ambulatory Behavior. IEEE EMBS NER.
Nuyujukian P.  2021.  Neuralink Monkey MindPong Deconstructed.
Bray IE, Clarke SE, Nuyujukian P.  2021.  A novel method for creating electrolytic lesions using a microelectrode array. Society for Neuroscience - Global Connectome.
Yamada L, Oskotsky T, Nuyujukian P.  2021.  Seizure detection and localization using human intracranial electrophysiology via information theoretic methods. COSYNE.
Yamada L, Oskotsky T, Nuyujukian P.  2021.  Seizure detection and localization using human intracranial electrophysiology via information theoretic methods. Society for Neuroscience - Global Connectome.
Yamada L, Oskotsky T, Nuyujukian P.  2021.  Seizure Detection Using Human Intracortical Electrophysiology Via Information Theoretic Methods. IEEE EMBS NER.
2020
Vesuna S*, Kauvar IV*, Richman E, Gore F, Oskotsky T, Sava-Segal C, Luo L, Malenka RC, Henderson JM, Nuyujukian P et al..  2020.  Deep posteromedial cortical rhythm in dissociation. Nature. 586:87-94.
2018
Stavisky SD, Kao JC, Nuyujukian P, Pandarinath C, Blabe CH, Ryu SI, Hochberg LR, Henderson JM, Shenoy KV.  2018.  Brain-machine interface cursor position only weakly affects monkey and human motor cortical activity in the absence of arm movements. Sci Rep. 8:16357.
Nuyujukian P*, Sanabria J*Albites, Saab J*, Pandarinath C, Jarosiewicz B, Blabe CH, Franco B, Mernoff ST, Eskandar EN, Simeral JD et al..  2018.  Cortical control of a tablet computer by people with paralysis. PLoS One. 13:e0204566.
Vyas S, Even-Chen N, Stavisky SD, Ryu SI, Nuyujukian P, Shenoy KV.  2018.  Neural population dynamics underlying motor learning transfer. Neuron. 97(5):998-1000.
Mehrotra P*, Dasgupta S*, Robertson S, Nuyujukian P.  2018.  An open-source realtime computational platform. Languages, Compilers, and Tools for Embedded Systems (LCTES). File 18MehrotraDasguptaEtAlLCTES_video_abstract.mp4 (4.98 MB)PDF icon 18MehrotraDasguptaEtAlLCTES.pdf (504.66 KB)
2017
Even-Chen N, Stavisky SD, Pandarinath C, Nuyujukian P, Blabe CH, Hochberg LR, Henderson JM, Shenoy KV.  2017.  Feasibility of automatic error detect-and-undo system in human intracortical brain-computer interfaces. IEEE Transactions on Biomedical Engineering. 65(8):1771-1784.
Pandarinath C*, Nuyujukian P*, Blabe CH, Sorice BL, Saab J, Willett FR, Hochberg LR, Shenoy KV**, Henderson JM**.  2017.  High performance communication by people with paralysis using an intracortical brain-computer interface. Elife. 6:e18554.
Kao JC*, Nuyujukian P*, Ryu SI, Shenoy KV.  2017.  A high-performance neural prosthesis incorporating discrete state seletion with hidden Markov models. IEEE Transactions on Biomedical Engineering. 64:935-945.
Nuyujukian P, Kao JC, Ryu SI, Shenoy KV.  2017.  A non-human primate brain-computer typing interface. Proceedings of the IEEE. 105:66-72.
Even-Chen N, Stavisky SD, Pandarinath C, Nuyujukian P, Blabe CH, Hochberg LR, Henderson JM, Shenoy KV.  2017.  Task outcome error signals in human primary motor cortex and their use in brain-computer interfaces. 8th International IEEE EMBS Conference on Neural Engineering.
2016
Kao JC, Pandarinath C, Nuyujukian P, Shenoy KV.  2016.  Brain-machine interface utilizing interventions to emphasize aspects of neural variance and decode speed and angle using a kinematics feedback filter that applies a covariance matrix.
2015
Gilja V*, Pandarinath C*, Blabe CH, Nuyujukian P, Simeral JD, Sarma AA, Sorice BL, Perge JA, Jarosiewicz B, Hochberg LR et al..  2015.  Clinical translation of a high performance neural prosthesis. Nature Medicine. 21:1142-1145.
Christie BP, Tat DM, Irwin ZT, Gilja V, Nuyujukian P, Foster JD, Ryu SI, Shenoy KV, Thompson DE, Chestek CA.  2015.  Comparison of spike sorting and thresholding of voltage waveforms for intracortical brain-machine interface performance. Journal of Neural Engineering. 12:016009.
Stavisky SD, Kao JC, Nuyujukian P, Ryu SI, Shenoy KV.  2015.  A high performing brain-machine interface driven by low-frequency local field potentials alone and together with spikes. Journal of Neural Engineering. 12:036009.
Nuyujukian P, Fan JM, Kao JC, Ryu SI, Shenoy KV.  2015.  A high-performance keyboard neural prosthesis enabled by task optimization. IEEE Transactions on Biomedical Engineering. 62:21-29.
Pandarinath C, Gilja V, Blabe CH, Nuyujukian P, Sarma AA, Sorice BL, Eskandar EN, Hochberg LR, Henderson JM, Shenoy KV.  2015.  Neural population dynamics in human motor cortex during movements in people with ALS. Elife. 4:e07436.
Kao JC, Nuyujukian P, Cunningham JP, Churchland MM, Ryu SI, Shenoy KV.  2015.  Single-trial dynamics of motor cortex and their applications to brain-machine interfaces. Nature Communications. 6:7759.
2014
Kao JC, Nuyujukian P, Churchland MM, Cunningham JP, Shenoy KV.  2014.  Brain machine interfaces incorporating neural population dynamics.
Foster JD, Nuyujukian P, Freifeld O, Gao H, Walker R, Ryu SI, Meng TH, Murmann B, Black MJ, Shenoy KV.  2014.  A freely-moving monkey treadmill model. Journal of Neural Engineering. 11:046020.
Stavisky SD, Kao JC, Nuyujukian P, Ryu SI, Shenoy KV.  2014.  Hybrid decoding of both spike and low-frequency local field potentials for brain-machine interfaces. Proc. of the 36th Annual International Conference IEEE EMBS. :3041-3044.
Kao JC, Stavisky SD, Sussillo D, Nuyujukian P, Shenoy KV.  2014.  Information Systems Opportunities in Brain-Machine Interface Decoders. Proceedings of the IEEE. 102:666-682.
Fan JM, Nuyujukian P, Kao JC, Chestek CA, Ryu SI, Shenoy KV.  2014.  Intention estimatation in brain machine interfaces. Journal of Neural Engineering. 11:016004.
Nuyujukian P, Kao JC, Fan JM, Stavisky SD, Ryu SI, Shenoy KV.  2014.  Performance sustaining intracortical neural prostheses. Journal of Neural Engineering. 11:066003.
Bishop W, Chestek CA, Gilja V, Nuyujukian P, Foster JD, Ryu SI, Shenoy KV, Yu BM.  2014.  Self-recalibrating classifiers for intracortical brain-computer interfaces. Journal of Neural Engineering. 11:026001.
2013
Nuyujukian P, Kao JC, Shenoy KV.  2013.  Brain machine interface utilizing a discrete action state decoder in parallel with a continuous decoder for a neural prosthetic device.
Dethier J*, Nuyujukian P*, Ryu SI, Shenoy KV, Boahen KA.  2013.  Design and validation of a real-time spiking-neural-network decoder for brain-machine interfaces. Journal of Neural Engineering. 10:036008.
Kao JC, Nuyujukian P, Stavisky SD, Ryu SI, Ganguli S, Shenoy KV.  2013.  Investigating the role of firing-rate normalization and dimensionality reduction on brain-machine interface robustness. Proc. of the 35th Annual IEEE EMBS Conference. :293-298.
2012
Gilja V*, Nuyujukian P*, Chestek CA, Cunningham JP, Yu BM, Fan JM, Ryu SI, Shenoy KV.  2012.  A Brain Machine Interface Control Algorithm Designed from a Feedback Control Perspective. Proc. of the 34th Annual IEEE EMBS Conference. :1318-1322.
Foster JD, Nuyujukian P, Freifeld O, Ryu SI, Black MJ, Shenoy KV.  2012.  A framework for relating neural activity to freely moving behavior. Proc. of the 34th Annual IEEE EMBS Conference. :2736-2739.
Gao H, Walker RM, Nuyujukian P, Makinwa KAA, Shenoy KV, Murmann B, Meng TH.  2012.  HermesE: A 96-Channel Full Data Rate Direct Neural Interface in 0.13 um CMOS. IEEE Journal of Solid-State Circuits. 47:1043-1055.
Gilja V*, Nuyujukian P*, Chestek CA, Cunningham JP, Yu BM, Fan JM, Churchland MM, Kaufman MT, Kao JC, Ryu SI et al..  2012.  A high-performance neural prosthesis enabled by control algorithm design. Nature Neuroscience. 15:1752-1757.
Nuyujukian P, Kao JC, Fan JM, Stavisky SD, Ryu SI, Shenoy KV.  2012.  A high-performance, robust brain-machine interface without retraining. Proc. of the 2012 Computational and Systems Neuroscience Conference.
Bishop W, Chestek CA, Gilja V, Nuyujukian P, Ryu SI, Shenoy KV, Yu BM.  2012.  Long-term Decoding Stability without Retraining for Intracortical Brain Computer Interface. Proc. of the 2012 Computational and Systems Neuroscience Conference.
Churchland MM*, Cunningham JP*, Kaufman MT, Foster JD, Nuyujukian P, Ryu SI, Shenoy KV.  2012.  Neural population dynamics during reaching. Nature. 487:51-56.
Sussillo D, Nuyujukian P, Fan JM, Kao JC, Stavisky SD, Ryu SI, Shenoy KV.  2012.  A recurrent neural network for closed-loop intracortical brain-machine interface decoders. Journal of Neural Engineering. 9:026027.
2011
Walker RM, Gao H, Nuyujukian P, Makinwa KAA, Shenoy KV, Meng TH, Murmann B.  2011.  A 96-channel full data rate direct neural interface in 0.13um CMOS. Proc. of the 2011 Symposium on VLSI Circuits (VLSIC).
Gilja V, Nuyujukian P, Chestek CA, Cunningham JP, Yu BM, Ryu SI, Shenoy KV.  2011.  Brain machine interface.
Dethier J, Nuyujukian P, Eliasmith C, Stewart TC, Elasaad SA, Shenoy KV, Boahen KA.  2011.  A brain-machine interface operating with a real-time spiking neural network control algorithm. Advances in Neural Information Processing Systems 24. :2213-2221.
Cunningham JP, Nuyujukian P, Gilja V, Chestek CA, Ryu SI, Shenoy KV.  2011.  A closed-loop human simulator for investigating the role of feedback-control in brain-machine interfaces. Journal of Neurophysiolgy. 105(4):1932-1949.
Foster JD, Freifeld O, Nuyujukian P, Ryu SI, Black MJ, Shenoy KV.  2011.  Combining wireless neural recording and video capture for the analysis of natural gait. Proc. of the 5th International IEEE EMBS Conference on Neural Engineering. :613-616.
Chestek CA, Gilja V, Nuyujukian P, Foster JD, Fan JM, Kaufman MT, Churchland MM, Rivera-Alvidrez Z, Cunningham JP, Ryu SI et al..  2011.  Long-term stability of neural prosthetic control signals from silicon cortical arrays in rhesus macaque motor cortex. Journal of Neural Engineering. 8:045005.
Nuyujukian P*, Fan JM*, Gilja V, Kalanithi PS, Chestek CA, Shenoy KV.  2011.  Monkey models for brain-machine interfaces: the need for maintaining diversity. Proc. of the 33rd Annual IEEE EMBS Conference.
Dethier J, Gilja V, Nuyujukian P, Elasaad SA, Shenoy KV, Boahen KA.  2011.  Spiking neural network decoder for brain-machine interfaces. Proc. of the 5th International IEEE EMBS Conference on Neural Engineering. :396-399.
2010
Gilja V, Chestek CA, Nuyujukian P, Foster JD, Shenoy KV.  2010.  Autonomous head-mounted electrophysiology systems for freely behaving primates. Current Opinion Neurobiology. 20:676-686.
Farshchi S, Pesterev A, Nuyujukian P, Guenterberg E, Mody I, Judy JW.  2010.  Embedded neural recording with TinyOS-based wireless-enabled processor modules. IEEE Transactions on Neural Systems and Rehabilitation Engineering. 18(2):134-141.
2009
Chestek CA, Gilja V, Nuyujukian P, Kier RJ, Solzbacher F, Ryu SI, Harrison RR, Shenoy KV.  2009.  HermesC: low-power wireless neural recording system for freely moving primates. IEEE Transactions on Neural Systems and Rehabilitation Engineering. 17(4):330-338.
Chestek CA, Cunningham JP, Gilja V, Nuyujukian P, Ryu SI, Shenoy KV.  2009.  Neural prosthetic systems: current problems and future directions. Proc. of the 31st Annual IEEE EMBS Conference. :3369-3375.
Harrison RR, Kier RJ, Chestek CA, Gilja V, Nuyujukian P, Ryu SI, Greger B, Solzbacher F, Shenoy KV.  2009.  Wireless neural recording with single low-power integrated circuit. IEEE Transactions on Neural Systems and Rehabilitation Engineering. 17(4):322-329.
2008
Chestek CA, Gilja V, Nuyujukian P, Ryu SI, Kier RJ, Solzbacher F, Harrison RR, Shenoy KV.  2008.  HermesC: RF wireless low-power neural recording system for freely behaving primates. Proc. of the 2008 IEEE International Symposium on Circuits and Systems Conference. :1752-1755.
Harrison RR, Kier RJ, Kim S, Rieth L, Warren DJ, Ledbetter NM, Clark GA, Solzbacher F, Chestek CA, Gilja V et al..  2008.  A wireless neural interface for chronic recording. Proc. of 2008 IEEE Biomedical Circuits and Systems Conference. :125-128.
Harrison RR, Kier RJ, Greger B, Solzbacher F, Chestek CA, Gilja V, Nuyujukian P, Ryu SI, Shenoy KV.  2008.  Wireless neural signal acquisition with single low-power integrated circuit. Proc. of the 2008 IEEE International Symposium on Circuits and Systems Conference. :1748-1751.
2007
Farshchi S, Pesterev A, Nuyujukian P, Mody I, Judy JW.  2007.  Bi-Fi: an embedded sensor/system architecture for remote biological monitoring. IEEE Transactions on Information Technology in Biomedicine. 11(6):611-618.
2006
Farshchi S, Nuyujukian P, Pesterev A, Mody I, Judy JW.  2006.  A TinyOS-enabled MICA2-based wireless neural interface. IEEE Transactions on Biomedical Engineering. 53(7):1416-1424.
2005
Farshchi S, Nuyujukian P, Pesterev A, Mody I, Judy JW.  2005.  A TinyOS-based wireless neural sensing, archiving, and hosting system. Proc. of 2nd IEEE EMBS Neural Engineering Conference. :671-674.